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Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning
ArticleAbstract: Whole genome sequencing of SARS-CoV-2 has occurred at an unprecedented scale, and can be exploited fPalabras claves:Autores:Aanensen D.M., Aggarwal D., Amato R., Ariani C.V., Barrett J.C., Bashton M., Beckett A.H., Beckwith S.M., Bernardo M. Gutierrez, Bonsall D., Bucca G., Bull M., Burns P.J., Byott M., Carabelli A.M., Carmichael S., Christofidis N., Connor T.R., Corden S., Cortes N., Cottrell S., Curran M.D., de Silva T.I., Eastick K., Enright J., Fairley D.J., Frampton D., Glaysher S., Goldstein E.J., Golubchik T., Goncalves S., Goodfellow I.G., Griffiths E., Gunson R.N., Hamilton W.L., Harrison E.M., Hassan-Ibrahim M.O., Holden M.T.G., Houlihan C., Hughes J., Jackson D.K., Jackson L.M., Johnston I., Kwiatkowski D.P., Langford C.F., Levett L.J., Liggett S., Lillie P.J., Livett R., Loman N.J., Loose M.W., Loveson K.F., Ludden C., Lythgoe K., Mahungu T.W., Moore C., Moore N., Moses S., Murray A., Nastouli E., Nebbia G., Nicholls S.M., Nickbakhsh S., Nomikou K., Nunez R.T.M., Orton R.J., Osman H., O’Grady J., Pacchiarini N., Palmalux N., Parker M.D., Parmar S., Pope C.F., Prieto J.A., Rambaut A., Randell P., Robson S.C., Rogan F., Saeed K., Shaaban S., Shepherd J.G., Sheridan L.A., Sillitoe J., Simpson D.A., Singleton D., Smith C.P., Smith D.L., Smollett K., Snell L.B., Sreenu V.B., Templeton K.E., Thomas C., Thomson E.C., Tomb R.M., Tong L., Torok M.E., Underwood A.P., Wang D., Watkins J., Williams C., Witney A.A.Fuentes:scopusEmergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America
ArticleAbstract: Although recombination is a feature of coronavirus evolution, previously detected recombinant lineagPalabras claves:Molecular epidemiology, phylogenetics, Recombination, SARS-COV-2Autores:Bernardo M. Gutierrez, Castelán-Sánchez H.G., da Silva Candido D., Delaye L., Escalera-Zamudio M., Faria N.R., Fleishon S., Houzet R., Jackson B., Pybus O.G., Rambaut A., Ruis C.Fuentes:scopusEstablishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
ArticleAbstract: The United Kingdom's COVID-19 epidemic during early 2020 was one of world's largest and was unusuallPalabras claves:Autores:Aanensen D.M., Ashworth J., Bernardo M. Gutierrez, Bogoch I.I., Colquhoun R., Connor T.R., du Plessis L., Faria N.R., Hill V., Jackson B., Khan K., Kraemer M.U.G., Loman N.J., McCrone J.T., Nicholls S.M., O'Toole Á., Parag K.V., Pybus O.G., Raghwani J., Rambaut A., Ruis C., Scher E., Vasylyeva T.I., Volz E.M., Watts A., Zarebski A.E.Fuentes:scopusReal-time, portable genome sequencing for Ebola surveillance
ArticleAbstract: The Ebola virus disease epidemic in West Africa is the largest on record, responsible for over 28,59Palabras claves:Autores:Afrough B., Amburgey V., Bado G., Bah A., Baillet B., Baum J.H.J., Becker-Ziaja B., Bello A., Bererd M., Boettcher J.P., Bore J.A., Cabeza-Cabrerizo M., Camara A., Camino-Sánchez Á., Carter L.L., Christopher H. Logue, Cowley L.A., Davis E., Delaune D., Di Caro A., DIallo B., Diarra A., Doerrbecker J., Dudas G., Duraffour S., Enkirch T., Faye O., Fleischmann E., Formenty P., Gabriel M., Garciá-Dorival I., Gerard M., Gerlach J., Gutierrez G.J., Hetzelt N., Hinzmann J., Hiscox J.A., Holm T., Hutley E., Johnston A.M.D., Jourdain M., Kafetzopoulou L.E., Keïta S., Koivogui L., Koropogui M., Kosgey A., Koundouno R., Kuisma E., Lewandowski K., Loman N.J., Magassouba N., Matthews D.A., Mazzarelli A., Meisel S., Mertens M., Michel J., Mikhail A., Milhano N., Monteil V., Nebie K.Y., Ngabo D., Nitzsche K., O'Shea M.K., Ouedraogo N., Pallasch E., Pallawo R.B., Patrono L.V., Pollakis G., Portmann J., Rachwal P., Racine T., Rambaut A., Repits J.G., Rickett N.Y., Roger I., Ruibal P., Sachse A., Sall A.A., Savane Y., Severi E., Simpson J.T., Singethan K., Smit E., Somlare H., Stoecker K., Taylor J., Turner D.J., Vitoriano I., Washington F., Weller S.A., Williams C.J., Williams C.V., Wilson D., Winona L., Wölfel R., Yattara F., Yemanaberhan R.L., Zekeng E.G.Fuentes:scopusRecurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
ArticleAbstract: We report severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike ΔH69/V70 in multiple inPalabras claves:Alpha variant, antibody escape, B.1.1.7, covid-19, deletion, infectivity, neutralizing antibodies, RESISTANCE, SARS-COV-2, spike mutationAutores:Aanensen D.M., Aggarwal D., Alderton A., Amato R., Andersson M.I., Ariani C.V., Awan A.R., Barrett J., Bashton M., Bassett A.R., Bernardo M. Gutierrez, Bonsall D., Bucca G., Bull M., Chand M., Chapman M.H.S., Chauhan A.J., Collier D.A., Connor T.R., Constantinidou C., Corden S., Cottrell S., Curran M.D., Darby A.C., Datir R.P., de Silva T.I., Dewar R., Elliott S., Fairley D.J., Ferreira I.A.T.M., Gallo G., Glaysher S., Golubchik T., Goncalves S., Hamilton W.L., Harrison E.M., Harvey W.T., Hassan-Ibrahim M.O., Hiscox J.A., Holden M.T.G., Jackson D.K., Jahun A.S., Jesudason N.G., Johnston I., Kemp S.A., Kwiatkowski D.P., Langford C.F., Lawniczak M., Li K.K., Livett R., Loman N.J., Loose M.W., Loveson K.F., Lowe H., Ludden C., Lytras S., Marelli S., Martincorena I., Martinez Nunez R.T., McCann C.M., McHugh M.P., McKenna J.P., McMurray C., Meng B., Mlcochova P., Mohamed A., Moore C., Moses S., Nelson A., Nicholls S.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Pandey S., Papa G., Parker M.D., Parmar S., Paterson S., Prieto J.A., Pybus O.G., Rambaut A., Robson S.C., Saeed K., Shah R.N., Shepherd J.G., Sillitoe J., Smith C.P., Smith D.L., Snell L.B., Taha Y., Templeton K.E., Thakur N., Thomson E.C., Torok M.E., Underwood A.P., Unnikrishnan M., Volz E.M., Wang D., Watkins J., Young G.R.Fuentes:scopusSARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2
ArticleAbstract: Background: Since the emergence of SARS-CoV-2, evolutionary pressure has driven large increases in tPalabras claves:covid-19, Delta variant, GENETIC DIVERSITY, mutation, SARS-COV-2, Transmission advantageAutores:Aanensen D.M., Aggarwal D., Amato R., Ariani C.V., Atchison C., Barrett J.C., Bashton M., Beckett A.H., Beckwith S.M., Bernardo M. Gutierrez, Bodinier B., Bonsall D., Bucca G., Bull M., Burns P.J., Byott M., Carabelli A.M., Chand M., Connor T.R., Corden S., Cortes N., Cottrell S., Curran M.D., Darby A.C., De Angelis D., de Oliveira Martins L., de Silva T.I., Eales O., Eastick K., Fairley D.J., Frampton D., Glaysher S., Golubchik T., Goncalves S., Goodfellow I.G., Gunson R.N., Gupta R.K., Hamilton W.L., Harrison E.M., Hassan-Ibrahim M.O., Haw D., Holden M.T.G., Houlihan C., Jackson D.K., Jackson L.M., Johnston I., Jonnerby J., Kwiatkowski D.P., Langford C.F., Levett L.J., Liggett S., Lillie P.J., Livett R., Loman N.J., Loose M.W., Loveson K.F., Ludden C., Lythgoe K., Mahungu T.W., Moore C., Moore N., Moses S., Murray A., Nastouli E., Nebbia G., Nicholls S.M., Nunez R.T.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Parker M.D., Parmar S., Paterson S., Pope C.F., Prieto J.A., Pybus O.G., Rambaut A., Randell P., Robson S.C., Rogan F., Saeed K., Shepherd J.G., Sheridan L.A., Sillitoe J., Simpson D.A., Singleton D., Smith C.P., Smith D.L., Snell L.B., Templeton K.E., Thomas C., Thomson E.C., Torok M.E., Underwood A.P., Volz E.M., Wang D., Wang H., Watkins J., Williams C., Witney A.A.Fuentes:scopusSpatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
ArticleAbstract: Understanding the causes and consequences of the emergence of severe acute respiratory syndrome coroPalabras claves:Autores:Aanensen D.M., Baele G., Bajaj S., Battle A.L., Bernardo M. Gutierrez, Cauchemez S., Colquhoun R., Dellicour S., du Plessis L., Faria N.R., Hill V., Jackson B., Klein B., Kraemer M.U.G., Loman N.J., McCrone J.T., O'Toole Á., Parag K.V., Pybus O.G., Rambaut A., Ruis C., Scarpino S.V., Vespignani A., Volz E.M.Fuentes:scopusTemporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa
ArticleAbstract: West Africa is currently witnessing the most extensive Ebola virus (EBOV) outbreak so far recorded.Palabras claves:Autores:Abdellati S., Afrough B., Aiyepada J., Akhilomen P., Asogun D., Atkinson B., Badusche M., Bah A., Bate S., Baumann J., Becker D., Becker-Ziaja B., Bocquin A., Boettcher J.P., Bore J.A., Borremans B., Bosworth A., Cannas A., Capobianchi M.R., Carletti F., Carroll M.W., Castilletti C., Christopher H. Logue, Clark S., Colavita F., DIederich S., Donatus A., Duraffour S., Ehichioya D., Ellerbrok H., Elmore M.J., Fernandez-Garcia M.D., Fizet A., Fleischmann E., Garciá-Dorival I., Gryseels S., Hermelink A., Hewson R., Hinzmann J., Hiscox J.A., Hopf-Guevara U., Ighodalo Y., Jameson L.J., Kelterbaum A., Kis Z., Kloth S., Kohl C., Korva M., Koundouno R., Kraus A., Kretschmer B., Kuisma E., Kurth A., Liedigk B., Ludtke A., Maes P., Matthews D.A., McCowen J., Mély S., Mertens M., Meschi S., Meyer B., Michel J., Molkenthin P., Muñoz-Fontela C., Muth D., Newman E.N.C., Ngabo D., Oestereich L., Okosun J., Olokor T., Omiunu R., Omomoh E., Pallasch E., Pályi B., Pollakis G., Portmann J., Pottage T., Pratt C., Priesnitz S., Quartu S., Rambaut A., Rappe J., Repits J.G., Richter M., Rudolf M., Sachse A., Schmidt K.M., Schudt G., Strecker T., Thom R., Thomas S., Tobin E., Tolley H., Trautner J., Vermoesen T., Vitoriano I., Wagner M., Wolff S., Yue C.Fuentes:scopus