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A computational method for the identification of dengue, zika and chikungunya virus species and genotypes
ArticleAbstract: In recent years, an increasing number of outbreaks of Dengue, Chikungunya and Zika viruses have beenPalabras claves:Autores:Abecasis A., Alcantara L.C.J., Cuypers L., Da Cunha R.V., de Carvalho Azevedo V.A., De Filippis A.M.B., de Oliveira T., Deforche K., Faria N.R., Fonseca V., Freire M., Giovanetti M., Isadora Cristina de Siqueira, Libin P.J.K., Machado K.C.B., Nowé A., Nunes M.R.T., Pybus O.G., Restovic M.I., San E.J., Santiago G.A., Theys K., Vandamme A.M.Fuentes:scopusA structural basis for antibody-mediated neutralization of Nipah virus reveals a site of vulnerability at the fusion glycoprotein apex
ArticleAbstract: Nipah virus (NiV) is a highly pathogenic paramyxovirus that causes frequent outbreaks of severe neurPalabras claves:Antibody response, Glycoprotein, henipavirus, Structure, Viral fusionAutores:Avanzato V.A., Bernardo M. Gutierrez, Bowden T.A., Doores K.J., Escalera-Zamudio M., Golden M., Kosakovsky Pond S.L., Lee B., Munster V.J., Oguntuyo K.Y., Pryce R., Pybus O.G., Seow J., Walter T.S.Fuentes:scopusEarly genomic detection of cosmopolitan genotype of dengue virus serotype 2, Angola, 2018
ArticleAbstract: We used portable genome sequencing to investigate reported dengue virus transmission in Angola. OurPalabras claves:Autores:Afonso J.M., Bernardo M. Gutierrez, Cândido A.L.M., Clemente C., da Silva S.P., de Oliveira T., de Vasconcelos J.N., Faria N.R., Hill S.C., Jandondo D., Mirandela M., Neto Z., Pybus O.G., Sebastião C.D.S., Thézé J.Fuentes:scopusEuropean surveillance network for influenza in pigs: Surveillance programs, diagnostic tools and swine influenza virus subtypes identified in 14 European countries from 2010 to 2013
ArticleAbstract: Swine influenza causes concern for global veterinary and public health officials. In continuing twoPalabras claves:Autores:Agüero M., Billinis C., Breum S.Ø., Brown I.H., Bublot M., Chen H., Chiapponi C., Dan A., Davidson I., Dürrwald R., Foni E., Harder T., Hervé S., Huovilainen A., Jaime E. Maldonado, Kellam P., Kyriakis C.S., Larsen L.E., Lewis N.S., Loeffen W.L.A., Markowska-Daniel I., Pybus O.G., Reid S.M., Schlegel M., Simon G., Urbaniak K., Van der Meulen K., Van Reeth K., Vila T., Vincent A.L., Watson S.J., Webby R.Fuentes:scopusMolecular epidemiology and evolution of influenza viruses circulating within European swine between 2009 and 2013
ArticleAbstract: The emergence in humans of the A(H1N1)pdm09 influenza virus, a complex reassortant virus of swine orPalabras claves:Autores:Bonin E., Brown I.H., Bublot M., Chiapponi C., Cotten M., Dan A., Davidson I., Dürrwald R., Edwards S., Foni E., Hjulsager C., Huovilainen A., Jaime E. Maldonado, Kellam P., Kelly M., Lam T.T.Y., Langat P., Larsen L.E., Loeffen W.L.A., Markowska-Daniel I., Pybus O.G., Qiu Y., Reid S.M., Schlegel M., Simon G., Urbaniak K., Valls L., Van Reeth K., Vila T., Watson S.J.Fuentes:scopusParallel evolution in the emergence of highly pathogenic avian influenza A viruses
ArticleAbstract: Parallel molecular evolution and adaptation are important phenomena commonly observed in viruses. HePalabras claves:Autores:Bernardo M. Gutierrez, Bowden T.A., Carrique L., Escalera-Zamudio M., Golden M., Keown J.R., Pybus O.G., Thézé J.Fuentes:scopusParallel molecular evolution and adaptation in viruses
ReviewAbstract: Parallel molecular evolution is the independent evolution of the same genotype or phenotype from disPalabras claves:Autores:Bernardo M. Gutierrez, Escalera-Zamudio M., Pybus O.G.Fuentes:scopusRecurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
ArticleAbstract: We report severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike ΔH69/V70 in multiple inPalabras claves:Alpha variant, antibody escape, B.1.1.7, covid-19, deletion, infectivity, neutralizing antibodies, RESISTANCE, SARS-COV-2, spike mutationAutores:Aanensen D.M., Aggarwal D., Alderton A., Amato R., Andersson M.I., Ariani C.V., Awan A.R., Barrett J., Bashton M., Bassett A.R., Bernardo M. Gutierrez, Bonsall D., Bucca G., Bull M., Chand M., Chapman M.H.S., Chauhan A.J., Collier D.A., Connor T.R., Constantinidou C., Corden S., Cottrell S., Curran M.D., Darby A.C., Datir R.P., de Silva T.I., Dewar R., Elliott S., Fairley D.J., Ferreira I.A.T.M., Gallo G., Glaysher S., Golubchik T., Goncalves S., Hamilton W.L., Harrison E.M., Harvey W.T., Hassan-Ibrahim M.O., Hiscox J.A., Holden M.T.G., Jackson D.K., Jahun A.S., Jesudason N.G., Johnston I., Kemp S.A., Kwiatkowski D.P., Langford C.F., Lawniczak M., Li K.K., Livett R., Loman N.J., Loose M.W., Loveson K.F., Lowe H., Ludden C., Lytras S., Marelli S., Martincorena I., Martinez Nunez R.T., McCann C.M., McHugh M.P., McKenna J.P., McMurray C., Meng B., Mlcochova P., Mohamed A., Moore C., Moses S., Nelson A., Nicholls S.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Pandey S., Papa G., Parker M.D., Parmar S., Paterson S., Prieto J.A., Pybus O.G., Rambaut A., Robson S.C., Saeed K., Shah R.N., Shepherd J.G., Sillitoe J., Smith C.P., Smith D.L., Snell L.B., Taha Y., Templeton K.E., Thakur N., Thomson E.C., Torok M.E., Underwood A.P., Unnikrishnan M., Volz E.M., Wang D., Watkins J., Young G.R.Fuentes:scopusSARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2
ArticleAbstract: Background: Since the emergence of SARS-CoV-2, evolutionary pressure has driven large increases in tPalabras claves:covid-19, Delta variant, GENETIC DIVERSITY, mutation, SARS-COV-2, Transmission advantageAutores:Aanensen D.M., Aggarwal D., Amato R., Ariani C.V., Atchison C., Barrett J.C., Bashton M., Beckett A.H., Beckwith S.M., Bernardo M. Gutierrez, Bodinier B., Bonsall D., Bucca G., Bull M., Burns P.J., Byott M., Carabelli A.M., Chand M., Connor T.R., Corden S., Cortes N., Cottrell S., Curran M.D., Darby A.C., De Angelis D., de Oliveira Martins L., de Silva T.I., Eales O., Eastick K., Fairley D.J., Frampton D., Glaysher S., Golubchik T., Goncalves S., Goodfellow I.G., Gunson R.N., Gupta R.K., Hamilton W.L., Harrison E.M., Hassan-Ibrahim M.O., Haw D., Holden M.T.G., Houlihan C., Jackson D.K., Jackson L.M., Johnston I., Jonnerby J., Kwiatkowski D.P., Langford C.F., Levett L.J., Liggett S., Lillie P.J., Livett R., Loman N.J., Loose M.W., Loveson K.F., Ludden C., Lythgoe K., Mahungu T.W., Moore C., Moore N., Moses S., Murray A., Nastouli E., Nebbia G., Nicholls S.M., Nunez R.T.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Parker M.D., Parmar S., Paterson S., Pope C.F., Prieto J.A., Pybus O.G., Rambaut A., Randell P., Robson S.C., Rogan F., Saeed K., Shepherd J.G., Sheridan L.A., Sillitoe J., Simpson D.A., Singleton D., Smith C.P., Smith D.L., Snell L.B., Templeton K.E., Thomas C., Thomson E.C., Torok M.E., Underwood A.P., Volz E.M., Wang D., Wang H., Watkins J., Williams C., Witney A.A.Fuentes:scopusOropouche virus cases identified in Ecuador using an optimised qrt-pcr informed by metagenomic sequencing
ArticleAbstract: Oropouche virus (OROV) is responsible for outbreaks of Oropouche fever in parts of South America. WePalabras claves:Autores:Atkinson B., Bernardo M. Gutierrez, Christopher H. Logue, Coloma J., Fejer G., Gabriel Antonio Trueba Piedrahita , Jackson S.K., Mellors J., Paz V., Pullan S.T., Pybus O.G., SONIA ZAPATA MENA, Sully Márquez, Wise E.L.Fuentes:googlescopus