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A Hooke's law-based approach to protein folding rate
ArticleAbstract: Kinetics is a key aspect of the renowned protein folding problem. Here, we propose a comprehensive aPalabras claves:Elastic folding constant, Folding degree, Folding kinetics, PROTDCALAutores:García Y., Prieto P.J., Ruiz-Blanco Y.B., Salgado J., Sotomayor-Torres C.M., Yovani Marrero-PonceFuentes:googlescopusA physics-based scoring function for protein structural decoys: Dynamic testing on targets of CASP-ROLL
ArticleAbstract: Most successful structure pbkp_rediction strategies use knowledge-based functions for global optimizPalabras claves:Autores:Amilkar Puris, Bello R.R., García Y., Green J.R., Ruiz-Blanco Y.B., Sotomayor-Torres C.M., Yovani Marrero-PonceFuentes:scopusGlobal stability of protein folding from an empirical free energy function
ArticleAbstract: The principles governing protein folding stand as one of the biggest challenges of Biophysics. ModelPalabras claves:Empirical potential for proteins, Pbkp_rediction of protein folding stability, PROTCALAutores:García Y., Paz W., Ruiz-Blanco Y.B., Salgado J., Yovani Marrero-PonceFuentes:googlescopusNew set of 2D/3D thermodynamic indices for proteins. A formalism based on "Molten Globule" theory
Conference ObjectAbstract: We define eight new macromolecular indices, and several related descriptors for proteins. The coarsePalabras claves:Folding degree, FPI, Protein folding descriptor, Protein indices, Protein stabilityAutores:García Y., Ruiz-Blanco Y.B., Sotomayor-Torres C.M., Yovani Marrero-PonceFuentes:googlescopusNovel “extended sequons” of human N-glycosylation sites improve the precision of qualitative pbkp_redictions: an alignment-free study of pattern recognition using ProtDCal protein features
ArticleAbstract: N-Glycosylation is a common post-translational modification that plays an important role in the propPalabras claves:Glycosylation motif, post-translational modification, Protein descriptor, PTMAutores:García-Hernández E., Green J.R., Ruiz-Blanco Y.B., Yovani Marrero-PonceFuentes:googlescopusOrthotropic Piezoelectricity in 2D Nanocellulose
ArticleAbstract: The control of electromechanical responses within bonding regions is essential to face frontier chalPalabras claves:Autores:García Y., Ruiz-Blanco Y.B., Sotomayor-Torres C.M., Yovani Marrero-PonceFuentes:googlescopusProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins
ArticleAbstract: Background: The exponential growth of protein structural and sequence databases is enabling multifacPalabras claves:Data Mining, PROTDCAL, Protein descriptors, Protein feature generation, Protein function modellingAutores:Green J.R., Paz W., Ruiz-Blanco Y.B., Yovani Marrero-PonceFuentes:googlescopus