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Article(6)
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International Journal of Data Mining and Bioinformatics(1)
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Microorganismos, hongos y algas(4)
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scopus(6)
A Step Towards Validation of High-Throughput Sequencing for the Identification of Plant Pathogenic Oomycetes
ArticleAbstract: The advancement in high-throughput sequencing (HTS) technology allows the detection of pathogens witPalabras claves:bioinformatics, microbiome, pathogen detectionAutores:Cardwell K.F., Carla D. Garzón, Espíndola A.S., Hoyt P.R., Marek S.M., Martin F.N., Schneider W.Fuentes:scopusA new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes
ArticleAbstract: Early stage infections caused by fungal/oomycete spores may not be detected until signs or symptomsPalabras claves:454 Roche, Chromalveolata, DIAGNOSTICS, e-probe, EDNA, Electronic probe, fungi, Oomycetes, Phakopsora pachyrhizi, Phytophthora ramorum, Puccinia graminis, Pucciniomycetes, Pythium ultimum, SequencingAutores:Carla D. Garzón, Espíndola A.S., Hoyt P.R., Marek S.M., Schneider W.Fuentes:scopusE-probe Diagnostic Nucleic acid Analysis (EDNA): A theoretical approach for handling of next generation sequencing data for diagnostics
ArticleAbstract: Plant biosecurity requires rapid identification of pathogenic organisms. While there are many pathogPalabras claves:bioinformatics, next-generation sequencing, pathogen detectionAutores:Carla D. Garzón, Daniels J., Espíndola A.S., Fletcher J., Melcher U., Ochoa-Corona F.M., Schneider W., Stobbe A.H., Verma R.Fuentes:scopusHighly sensitive end-point PCR and SYBR green qPCR detection of phymatotrichopsis omnivora, causal fungus of cotton root rot
ArticleAbstract: Phymatotrichopsis omnivora, the causal pathogen of cotton root rot, is a devastating ascomycete thatPalabras claves:Autores:Arif M., Carla D. Garzón, Dobhal S., Espíndola A.S., Marek S.M., Ochoa-Corona F.M., Orquera G.K., PATRICIA GARRIDO, Young C.A.Fuentes:scopusInferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool
ArticleAbstract: E-probe Diagnostic for Nucleic acid Analysis (EDNA) is a bioinformatic tool originally developed toPalabras claves:Autores:Cardwell K.F., Carla D. Garzón, Carrillo Y., Espíndola A.S., Hoyt P.R., Marek S.M., Melouk H.A., Schneider W.Fuentes:scopusPopulation structure of Pythium irregulare, P. ultimum, and P. sylvaticum in forest nursery soils of Oregon and Washington
ArticleAbstract: Pythium species are important soilborne pathogens occurring in the forest nursery industry of the PaPalabras claves:Autores:Carla D. Garzón, Espíndola A.S., Grünwald N.J., Kamvar Z.N., Marek S.M., PATRICIA GARRIDO, Weiland J.E.Fuentes:scopus