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Extensive allopolyploidy in the neotropical genus Lachemilla (Rosaceae) revealed by PCR-based target enrichment of the nuclear ribosomal DNA cistron and plastid phylogenomics
ArticleAbstract: Premise of the Study: Polyploidy has been long recognized as an important force in plant evolution.Palabras claves:CpDNA, cytonuclear discordance, haplotype inference, incomplete concerted evolution, Lachemilla, microfluidic PCR, multiple origins of polyploidy, nrDNA, ribotype clustering, RosaceaeAutores:Diego F. Morales-Briones, Tank D.C.Fuentes:scopusChloroplast primers for clade-wide phylogenetic studies of Thalictrum
ArticleAbstract: Premise: Chloroplast primers were developed for phylogenetic and comparative studies in Thalictrum (Palabras claves:chloroplast genome, high-throughput sequencing, meadow-rue, microfluidic PCR, Ranunculaceae, Thalictrum thalictroidesAutores:Arias T., Di Stilio V.S., Diego F. Morales-Briones, Tank D.C.Fuentes:scopusAnalysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
ArticleAbstract: Target enrichment is becoming increasingly popular for phylogenomic studies. Although baits for enriPalabras claves:Autores:Diego F. Morales-Briones, Gehrke B., Huang C.H., Liston A., Ma H., Marx H.E., Tank D.C., Yang Y.Fuentes:scopusFluidigm2PURC: Automated processing and haplotype inference for double-barcoded PCR amplicons
ArticleAbstract: Premise of the Study: Targeted enrichment strategies for phylogenomic inference are a time- and costPalabras claves:bioinformatics, haplotype inference, high-throughput sequencing, microfluidic PCR, Phylogenomics, PolyploidyAutores:Blischak P.D., Di Stilio V.S., Diego F. Morales-Briones, Johnson J.C., Latvis M., Tank D.C., Wolfe A.D.Fuentes:scopusPhylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades
ArticleAbstract: Premise: Phylogenomic datasets using genomes and transcriptomes provide rich opportunities beyond rePalabras claves:Diplacus, Erythranthe, Lamiales, Mimulus, Reticulate evolution, Transcriptome, whole genome duplicationAutores:Diego F. Morales-Briones, Gilmore C.D., Grossenbacher D.L., Huang E.Y., Lin N., Sobel J.M., Tank D.C., Yang Y.Fuentes:scopusPhylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
ArticleAbstract: Hybridization, incomplete lineage sorting, and phylogenetic error produce similar incongruence pattePalabras claves:cytonuclear discordance, gene flow, hybridization, introgression, Lachemilla (Rosaceae), phylogenetic networks, Polyploidy, Species treesAutores:Diego F. Morales-Briones, Liston A., Tank D.C.Fuentes:scopusPhylogeny and Evolution of the Neotropical Radiation of Lachemilla (Rosaceae): Uncovering a History of Reticulate Evolution and Implications for Infrageneric Classification
ArticleAbstract: Reticulate evolution often leads to incongruence between nuclear and plastid phylogenies, and comparPalabras claves:Andes, CpDNA, hybridization, nrDNA, Paramo, PolyploidyAutores:Diego F. Morales-Briones, Katya Romoleroux, Kolář F., Tank D.C.Fuentes:googlescopusPrimers for castilleja and their utility across orobanchaceae: I. Chloroplast primers
ArticleAbstract: Premise of the study: Chloroplast primers were developed from genomic data for the taxonomically chaPalabras claves:Castilleja, Chloroplast, hemiparasite, high-throughput sequencing, microfluidic PCR, OrobanchaceaeAutores:Diego F. Morales-Briones, Jacobs S., Latvis M., Mathews S., Mortimer S., Tank D.C., Torpey S., Uribe-Convers S.Fuentes:scopusThree new species of Lachemilla (Rosaceae) from South America
ArticleAbstract: Three new species of Lachemilla (Rosaceae), two from Colombia and one from Peru, are described and iPalabras claves:Allopolyploidy, COLOMBIA, Lachemilla, New species, Paramo, Perú, RosaceaeAutores:Diego F. Morales-Briones, Katya Romoleroux, Tank D.C.Fuentes:googlescopus