Representing Cellular Lines with SVM and Text Processing

Abstract:

A main problem for predicting cell line interactions with chemical compounds is the lack of a computational representation for cell lines. We describe a method for characterizing cell lines from scientific literature. We retrieve and process cell line-related scientific papers, perform a document classification algorithm, and then obtain a description of the information space of each cell line. We have successfully characterized a set of 300+ cell lines.

Año de publicación:

2020

Keywords:

• Knowledge Representation
• Machine learning
• bioinformatics

Fuente:

scopus

google