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A computational method for the identification of dengue, zika and chikungunya virus species and genotypes
ArticleAbstract: In recent years, an increasing number of outbreaks of Dengue, Chikungunya and Zika viruses have beenPalabras claves:Autores:Abecasis A., Alcantara L.C.J., Cuypers L., Da Cunha R.V., de Carvalho Azevedo V.A., De Filippis A.M.B., de Oliveira T., Deforche K., Faria N.R., Fonseca V., Freire M., Giovanetti M., Isadora Cristina de Siqueira, Libin P.J.K., Machado K.C.B., Nowé A., Nunes M.R.T., Pybus O.G., Restovic M.I., San E.J., Santiago G.A., Theys K., Vandamme A.M.Fuentes:scopusGenomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador
ArticleAbstract: Characterisation of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic diversity tPalabras claves:Molecular epidemiology, phylogenetics, Phylogeography, SARS-COV-2, Transmission lineagesAutores:Andrade-Molina D.M., Andrés Carrazco-Montalvo, Belén Prado-Vivar, Bernardo M. Gutierrez, Brünink S., Bruno A., Coloma J., da Silva Candido D., de Mora D., Drexler J.F., du Plessis L., Escalera-Zamudio M., Faria N.R., Fernandez-Cadena J.C., Gabriel Morey León, Gabriel Trueba, Juan José Guadalupe, Kraemer M.U.G., Kühne A., Manuel V. Gónzalez, McCrone J.T., Mestanza O., Michelle Grunauer Andrade, Mónica Becerra-Wong, Moreira-Soto A., Olmedo M., Orlando S.A., Patino L., Patricio Rojas-Silva, Paul Andres Cardenas, Paul Cardenas, Portugal D., Pybus O.G., Rubén Armas-Gonzalez, Sander A.L., Sevillano G., Sully Márquez, Verónica Barragán, Zurita JeanneteFuentes:googlescopusFirst complete genome sequences of Zika virus isolated from febrile patient sera in Ecuador
ArticleAbstract: Here, we present the complete genome sequences of two Zika virus (ZIKV) strains, EcEs062_16 and EcEsPalabras claves:Autores:Bonsall D., Carroll M.W., Christopher H. Logue, Coloma J., Gabriel Trueba, J. Carrera, Joseph Neil Spindel Eisenberg, Klenerman P., Lewandowski K., Loman N.J., Paz V., Powell R., Pullan S.T., Pybus O.G., Quick J., Sully Márquez, Thézé J.Fuentes:scopusEarly genomic detection of cosmopolitan genotype of dengue virus serotype 2, Angola, 2018
ArticleAbstract: We used portable genome sequencing to investigate reported dengue virus transmission in Angola. OurPalabras claves:Autores:Afonso J.M., Bernardo M. Gutierrez, Cândido A.L.M., Clemente C., da Silva S.P., de Oliveira T., de Vasconcelos J.N., Faria N.R., Hill S.C., Jandondo D., Mirandela M., Neto Z., Pybus O.G., Sebastião C.D.S., Thézé J.Fuentes:scopusEuropean surveillance network for influenza in pigs: Surveillance programs, diagnostic tools and swine influenza virus subtypes identified in 14 European countries from 2010 to 2013
ArticleAbstract: Swine influenza causes concern for global veterinary and public health officials. In continuing twoPalabras claves:Autores:Agüero M., Billinis C., Breum S.Ø., Brown I.H., Bublot M., Chen H., Chiapponi C., Dan A., Davidson I., Dürrwald R., Foni E., Harder T., Hervé S., Huovilainen A., Jaime E. Maldonado, Kellam P., Kyriakis C.S., Larsen L.E., Lewis N.S., Loeffen W.L.A., Markowska-Daniel I., Pybus O.G., Reid S.M., Schlegel M., Simon G., Urbaniak K., Van der Meulen K., Van Reeth K., Vila T., Vincent A.L., Watson S.J., Webby R.Fuentes:scopusOropouche virus cases identified in Ecuador using an optimised qrt-pcr informed by metagenomic sequencing
ArticleAbstract: Oropouche virus (OROV) is responsible for outbreaks of Oropouche fever in parts of South America. WePalabras claves:Autores:Atkinson B., Bernardo M. Gutierrez, Christopher H. Logue, Coloma J., Fejer G., Gabriel Trueba, Jackson S.K., Mellors J., Paz V., Pullan S.T., Pybus O.G., SONIA ZAPATA MENA, Sully Márquez, Wise E.L.Fuentes:googlescopusRecurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
ArticleAbstract: We report severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike ΔH69/V70 in multiple inPalabras claves:Alpha variant, antibody escape, B.1.1.7, covid-19, deletion, infectivity, neutralizing antibodies, RESISTANCE, SARS-COV-2, spike mutationAutores:Aanensen D.M., Aggarwal D., Alderton A., Amato R., Andersson M.I., Ariani C.V., Awan A.R., Barrett J., Bashton M., Bassett A.R., Bernardo M. Gutierrez, Bonsall D., Bucca G., Bull M., Chand M., Chapman M.H.S., Chauhan A.J., Collier D.A., Connor T.R., Constantinidou C., Corden S., Cottrell S., Curran M.D., Darby A.C., Datir R.P., de Silva T.I., Dewar R., Elliott S., Fairley D.J., Ferreira I.A.T.M., Gallo G., Glaysher S., Golubchik T., Goncalves S., Hamilton W.L., Harrison E.M., Harvey W.T., Hassan-Ibrahim M.O., Hiscox J.A., Holden M.T.G., Jackson D.K., Jahun A.S., Jesudason N.G., Johnston I., Kemp S.A., Kwiatkowski D.P., Langford C.F., Lawniczak M., Li K.K., Livett R., Loman N.J., Loose M.W., Loveson K.F., Lowe H., Ludden C., Lytras S., Marelli S., Martincorena I., Martinez Nunez R.T., McCann C.M., McHugh M.P., McKenna J.P., McMurray C., Meng B., Mlcochova P., Mohamed A., Moore C., Moses S., Nelson A., Nicholls S.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Pandey S., Papa G., Parker M.D., Parmar S., Paterson S., Prieto J.A., Pybus O.G., Rambaut A., Robson S.C., Saeed K., Shah R.N., Shepherd J.G., Sillitoe J., Smith C.P., Smith D.L., Snell L.B., Taha Y., Templeton K.E., Thakur N., Thomson E.C., Torok M.E., Underwood A.P., Unnikrishnan M., Volz E.M., Wang D., Watkins J., Young G.R.Fuentes:scopusSpatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
ArticleAbstract: Understanding the causes and consequences of the emergence of severe acute respiratory syndrome coroPalabras claves:Autores:Aanensen D.M., Baele G., Bajaj S., Battle A.L., Bernardo M. Gutierrez, Cauchemez S., Colquhoun R., Dellicour S., du Plessis L., Faria N.R., Hill V., Jackson B., Klein B., Kraemer M.U.G., Loman N.J., McCrone J.T., O'Toole Á., Parag K.V., Pybus O.G., Rambaut A., Ruis C., Scarpino S.V., Vespignani A., Volz E.M.Fuentes:scopus