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A computational method for the identification of dengue, zika and chikungunya virus species and genotypes
ArticleAbstract: In recent years, an increasing number of outbreaks of Dengue, Chikungunya and Zika viruses have beenPalabras claves:Autores:Abecasis A., Alcantara L.C.J., Cuypers L., Da Cunha R.V., de Carvalho Azevedo V.A., De Filippis A.M.B., de Oliveira T., Deforche K., Faria N.R., Fonseca V., Freire M., Giovanetti M., Isadora Cristina de Siqueira, Libin P.J.K., Machado K.C.B., Nowé A., Nunes M.R.T., Pybus O.G., Restovic M.I., San E.J., Santiago G.A., Theys K., Vandamme A.M.Fuentes:scopusCrowding and the shape of COVID-19 epidemics
ArticleAbstract: The coronavirus disease 2019 (COVID-19) pandemic is straining public health systems worldwide, and mPalabras claves:Autores:Adlam B., Bernardo M. Gutierrez, Brownstein J.S., Castro M.C., Dye C., Hill A.L., Kraemer M.U.G., Nande A., Pigott D.M., Pybus O.G., Rader B., Reiner R.C., Scarpino S.V., Shrestha M., Tian H., Zarebski A.E.Fuentes:scopusEarly genomic detection of cosmopolitan genotype of dengue virus serotype 2, Angola, 2018
ArticleAbstract: We used portable genome sequencing to investigate reported dengue virus transmission in Angola. OurPalabras claves:Autores:Afonso J.M., Bernardo M. Gutierrez, Cândido A.L.M., Clemente C., da Silva S.P., de Oliveira T., de Vasconcelos J.N., Faria N.R., Hill S.C., Jandondo D., Mirandela M., Neto Z., Pybus O.G., Sebastião C.D.S., Thézé J.Fuentes:scopusParallel evolution in the emergence of highly pathogenic avian influenza A viruses
ArticleAbstract: Parallel molecular evolution and adaptation are important phenomena commonly observed in viruses. HePalabras claves:Autores:Bernardo M. Gutierrez, Bowden T.A., Carrique L., Escalera-Zamudio M., Golden M., Keown J.R., Pybus O.G., Thézé J.Fuentes:scopusParallel molecular evolution and adaptation in viruses
ReviewAbstract: Parallel molecular evolution is the independent evolution of the same genotype or phenotype from disPalabras claves:Autores:Bernardo M. Gutierrez, Escalera-Zamudio M., Pybus O.G.Fuentes:scopusRecurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
ArticleAbstract: We report severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike ΔH69/V70 in multiple inPalabras claves:Alpha variant, antibody escape, B.1.1.7, covid-19, deletion, infectivity, neutralizing antibodies, RESISTANCE, SARS-COV-2, spike mutationAutores:Aanensen D.M., Aggarwal D., Alderton A., Amato R., Andersson M.I., Ariani C.V., Awan A.R., Barrett J., Bashton M., Bassett A.R., Bernardo M. Gutierrez, Bonsall D., Bucca G., Bull M., Chand M., Chapman M.H.S., Chauhan A.J., Collier D.A., Connor T.R., Constantinidou C., Corden S., Cottrell S., Curran M.D., Darby A.C., Datir R.P., de Silva T.I., Dewar R., Elliott S., Fairley D.J., Ferreira I.A.T.M., Gallo G., Glaysher S., Golubchik T., Goncalves S., Hamilton W.L., Harrison E.M., Harvey W.T., Hassan-Ibrahim M.O., Hiscox J.A., Holden M.T.G., Jackson D.K., Jahun A.S., Jesudason N.G., Johnston I., Kemp S.A., Kwiatkowski D.P., Langford C.F., Lawniczak M., Li K.K., Livett R., Loman N.J., Loose M.W., Loveson K.F., Lowe H., Ludden C., Lytras S., Marelli S., Martincorena I., Martinez Nunez R.T., McCann C.M., McHugh M.P., McKenna J.P., McMurray C., Meng B., Mlcochova P., Mohamed A., Moore C., Moses S., Nelson A., Nicholls S.M., Osman H., O’Grady J., Pacchiarini N., Page A.J., Pandey S., Papa G., Parker M.D., Parmar S., Paterson S., Prieto J.A., Pybus O.G., Rambaut A., Robson S.C., Saeed K., Shah R.N., Shepherd J.G., Sillitoe J., Smith C.P., Smith D.L., Snell L.B., Taha Y., Templeton K.E., Thakur N., Thomson E.C., Torok M.E., Underwood A.P., Unnikrishnan M., Volz E.M., Wang D., Watkins J., Young G.R.Fuentes:scopus“Kankasha” in Kassala: A prospective observational cohort study of the clinical characteristics, epidemiology, genetic origin, and chronic impact of the 2018 epidemic of Chikungunya virus infection in Kassala, Sudan
ArticleAbstract: Background The public health impact of Chikungunya virus (CHIKV) is often underestimated. Usually coPalabras claves:Autores:Abdalla O.I., Abdallah T.M., Adam A.A.A.H., Albadri O., Alfakiyousif M.E.A., Alzain M.A., Arnold U., Bernardo M. Gutierrez, Bower H., Carter D.P., El Karsany M., Elagib N., Eldigail M., Fletcher T.E., Gannon B., Idriss M.I., Jacob S.T., Mahmoud I., Mahmoud S.A.A., Mohamed R., Pullan S.T., Pybus O.G.Fuentes:scopusSpatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
ArticleAbstract: Understanding the causes and consequences of the emergence of severe acute respiratory syndrome coroPalabras claves:Autores:Aanensen D.M., Baele G., Bajaj S., Battle A.L., Bernardo M. Gutierrez, Cauchemez S., Colquhoun R., Dellicour S., du Plessis L., Faria N.R., Hill V., Jackson B., Klein B., Kraemer M.U.G., Loman N.J., McCrone J.T., O'Toole Á., Parag K.V., Pybus O.G., Rambaut A., Ruis C., Scarpino S.V., Vespignani A., Volz E.M.Fuentes:scopusGenomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador
ArticleAbstract: Characterisation of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic diversity tPalabras claves:Molecular epidemiology, phylogenetics, Phylogeography, SARS-COV-2, Transmission lineagesAutores:Andrade-Molina D.M., Andrés Carrazco-Montalvo, Belén Prado-Vivar, Bernardo M. Gutierrez, Brünink S., Bruno A., Coloma J., da Silva Candido D., de Mora D., Drexler J.F., du Plessis L., Escalera-Zamudio M., Faria N.R., Fernandez-Cadena J.C., Gabriel Antonio Trueba Piedrahita , Gabriel Morey León, Juan José Guadalupe, Kraemer M.U.G., Kühne A., Manuel V. Gónzalez, McCrone J.T., Mestanza O., Michelle Grunauer Andrade, Mónica Becerra-Wong, Moreira-Soto A., Olmedo M., Orlando S.A., Patino L., Patricio Rojas-Silva, Paul Andres Cardenas, Paul Cardenas, Portugal D., Pybus O.G., Rubén Armas-Gonzalez, Sander A.L., Sevillano G., Sully Márquez, Verónica Barragán, Zurita JeanneteFuentes:googlescopusOropouche virus cases identified in Ecuador using an optimised qrt-pcr informed by metagenomic sequencing
ArticleAbstract: Oropouche virus (OROV) is responsible for outbreaks of Oropouche fever in parts of South America. WePalabras claves:Autores:Atkinson B., Bernardo M. Gutierrez, Christopher H. Logue, Coloma J., Fejer G., Gabriel Antonio Trueba Piedrahita , Jackson S.K., Mellors J., Paz V., Pullan S.T., Pybus O.G., SONIA ZAPATA MENA, Sully Márquez, Wise E.L.Fuentes:googlescopus