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Expression divergence between Escherichia coli and Salmonella enterica serovar typhimurium reflects their lifestyles
ArticleAbstract: Escherichia coli K12 is a commensal bacteria and one of the best-studied model organisms. SalmonellaPalabras claves:ESCHERICHIA coli, expression conservation, expression divergence, Gene Expression, pathogenesis, salmonellaAutores:Aminael Sánchez-Rodríguez, Engelen K., Fu Q., Marchal K., Meysman P.Fuentes:googlescopusFrequency-based haplotype reconstruction from deep sequencing data of bacterial populations
ArticleAbstract: Clonal populations accumulate mutations over time, resulting in different haplotypes. Deep sequencinPalabras claves:Autores:A. Dubey, A. Sanchez Rodriguez, Aminael Sánchez-Rodríguez, B. Van Den Bergh, Dubey A., Fostier J., H. Steenackers, J. Fostier, J. Michiels, K. Marchal, Marchal K., Michiels J., Pulido-Tamayo S., S. Pulido-Tamayo, Steenackers H., Swings T., T. Swings, Van Den Bergh B.Fuentes:googlerraaescopusGenome sequence of Rhizobium etli CNPAF512, a nitrogen-fixing symbiont isolated from bean root nodules in Brazil
OtherAbstract: Rhizobium etli is a Gram-negative soil-dwelling alphaproteobacterium that carries out symbiotic biolPalabras claves:Autores:Aminael Sánchez-Rodríguez, Beullens S., Fauvart M., Marchal K., Michiels J.Fuentes:googlescopusGenome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles
ArticleAbstract: Availability of genome-wide gene expression datasets provides the opportunity to study gene expressiPalabras claves:Autores:Aminael Sánchez-Rodríguez, Hosseinkhan N., Marchal K., Masoudi-Nejad A., Narimani Z., Zarrineh P.Fuentes:googlescopusDirected module detection in a large-scale expression compendium
ArticleAbstract: Public online microarray databases contain tremendous amounts of expression data. Mining these dataPalabras claves:Bi-cluster, Coexpression module, Condition annotation, Expression profile, Microarray compendium, Motif, Regulatory network, transcriptomics, web serviceAutores:Aminael Sánchez-Rodríguez, Engelen K., Fierro A.C., Fu Q., Lemmens K., Marchal K., Meysman P., Sun H., Thijs I.Fuentes:googlescopusA combined approach to study the protein glycosylation potential of Lactobacillus rhamnosus GG (LGG).
ArticleAbstract:Palabras claves:Autores:Aminael Sánchez-Rodríguez, De Keersmaecker S., Lebeer S., Marchal K., Schoofs G., Tytgat H., Vanderleyden J., Verhoeven T.Fuentes:googlescopusA network-based approach to identify substrate classes of bacterial glycosyltransferases
ArticleAbstract: Background: Bacterial interactions with the environment- and/or host largely depend on the bacterialPalabras claves:Bacterial glycosylation, Campylobacter jejuni, Glycosyltransferases, Lactobacillus rhamnosus GG, Network-based pbkp_rediction, Sequence-based pbkp_redictionAutores:A. Sanchez Rodriguez, Aminael Sánchez-Rodríguez, Lebeer S., Marchal K., Tytgat H., Vanderleyden J., Winderickx J.Fuentes:googlerraaescopusColombos: Access port for cross-platform bacterial expression compendia
ArticleAbstract: Background: Microarrays are the main technology for large-scale transcriptional gene expression profPalabras claves:Autores:Aminael Sánchez-Rodríguez, de Smet R., Engelen K., Fierro A.C., Fu Q., Lemmens K., Marchal K., Meysman P.Fuentes:googlescopusAn alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference
ArticleAbstract: The ITS2 gene class shows a high sequence divergence among its members that have complicated its annPalabras claves:Autores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., Hidalgo-Yanes P.I., Marchal K., Molina-Ruiz R., Vasconcelos V., Yunierkis Perez-CastilloFuentes:googlescopusCOMODO: An adaptive coclustering strategy to identify conserved coexpression modules between organisms
ArticleAbstract: Increasingly large-scale expression compendia for different species are becoming available. By exploPalabras claves:Autores:Aminael Sánchez-Rodríguez, De Moor B., Engelen K., Fierro A.C., Marchal K., Zarrineh P.Fuentes:googlescopus