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An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference
ArticleAbstract: The ITS2 gene class shows a high sequence divergence among its members that have complicated its annPalabras claves:Autores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., Hidalgo-Yanes P.I., Marchal K., Molina-Ruiz R., Vasconcelos V., Yunierkis Perez-CastilloFuentes:googlescopusA Novel Network Science and Similarity-Searching-Based Approach for Discovering Potential Tumor-Homing Peptides from Antimicrobials
ArticleAbstract: Peptide-based drugs are promising anticancer candidates due to their biocompatibility and low toxiciPalabras claves:Cáncer, centrality measure, chemical space network, Complex network, group fusion, in silico drug discovery, motif discovery, Similarity searching, starPep toolbox software, tumor-homing peptideAutores:Agüero-Chapin G., Aguilera-Mendoza L., Antunes A., Hortensia Rodriguez Cabrera, Martinez-Rios F.O., Maylin Romero, Yovani Marrero-PonceFuentes:googlescopusAlignment-free methods for the detection and specificity pbkp_rediction of adenylation domains
Book PartAbstract: Identifying adenylation domains (A-domains) and their substrate specificity can aid the detection ofPalabras claves:Adenylation domains, Alignment-free models, NRPS, topological indices, Transductive support vector machinesAutores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., Pérez-Machado G., Santos M.Fuentes:googlescopusExploring the Adenylation Domain Repertoire of Nonribosomal Peptide Synthetases Using an Ensemble of Sequence-Search Methods
ArticleAbstract: The introduction of two-dimension (2D) graphs and their numerical characterization for comparative aPalabras claves:Autores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., de la Riva G.A., Maldonado E., Molina-Ruiz R., Vasconcelos V.Fuentes:googlescopusEmerging Computational Approaches for Antimicrobial Peptide Discovery
ReviewAbstract: In the last two decades many reports have addressed the application of artificial intelligence (AI)Palabras claves:Amps, Artificial Intelligence, complex networks, Evolutionary algorithms, Machine learning, Molecular descriptors, proteogenomicsAutores:Agüero-Chapin G., Antunes A., Domínguez-Pérez D., Galpert-Cañizares D., Pérez-Machado G., Teijeira M., Yovani Marrero-PonceFuentes:googlescopusNon-linear models based on simple topological indices to identify RNase III protein members
ArticleAbstract: Alignment-free classifiers are especially useful in the functional classification of protein classesPalabras claves:Alignment-free models, artificial neural networks, Clustering, Decision tree models, Spectral momentsAutores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., de la Riva G.A., Molina-Ruiz R., Pérez-Machado G., Vasconcelos V.Fuentes:googlescopusTI2BioP: Topological Indices to BioPolymers. Its practical use to unravel cryptic bacteriocin-like domains
ArticleAbstract: Bacteriocins are proteinaceous toxins produced and exported by both gram-negative and gram-positivePalabras claves:Alignment methods, Artificial secondary structure, Bacteriocin, Spectral moments, topological indicesAutores:Agüero-Chapin G., Antunes A., Molina-Ruiz R., Morales-Helguera A., Pérez-Machado G., Vasconcelos V., Yunierkis Perez-CastilloFuentes:googlescopusDISTATIS: A Promising Framework to Integrate Distance Matrices in Molecular Phylogenetics
ArticleAbstract: BACKGROUND: Molecular phylogenetic algorithms frequently disagree with the approaches considering rePalabras claves:Alignment-free, Ascospore morphology, DISTATIS, ITS2, mating strategy, phylogeneticsAutores:Agüero-Chapin G., Aminael Sánchez-Rodríguez, Antunes A., Molina-Ruiz R., Oscar Vivanco-Galván, Vivanco-Galván O., Yuliana Jiménez-GaonaFuentes:googlescopus